You
are visiting
www.rawfoodinfo.com
Harper's
Magazine
Feb 2002
UNRAVELING
THE DNA MYTH
The spurious foundation of genetic engineering
by Barry Commoner
Barry Commoner is senior scientist at the Center for the Biology of
Natural Systems at Queens College, City University of New York,
where he directs the Critical Genetics Project.
Biology once was regarded as a languid, largely descriptive discipline, a
passive science that was content, for much of its history, merely to observe
the natural world rather than change it. No longer. Today biology, armed with
the power of genetics, has replaced physics as the activist Science of the
Century, and it stands poised to assume godlike powers of creation, calling
forth artificial forms of life rather than undiscovered elements and subatomic
particles. The initial steps toward this new Genesis have been widely touted
in the press. It wasn't so long ago that Scottish scientists stunned the world
with Dolly1, the fatherless sheep cloned directly from her mother's
cells; these techniques have now been applied, unsuccessfully, to human cells.
ANDi2, a photogenic rhesus monkey, recently was born carrying the gene
of a luminescent jellyfish. Pigs now carry a gene for bovine growth hormone
and show significant improvement in weight gain, feed efficiency, and reduced
fat.3 Most soybean plants grown in the United States have been genetically
engineered to survive the application of powerful herbicides. Corn plants
now contain a bacterial gene that produces an insecticidal protein rendering
them poisonous to earworms.4
Our leading scientists and scientific entrepreneurs (two labels that are increasingly
interchangeable) assure us that these feats of technological prowess, though
marvelous and complex, are nonetheless safe and reliable. We are told that
everything is under control. Conveniently ignored, forgotten, or in some instances
simply suppressed, are the caveats, the fine print, the flaws and spontaneous
abortions. Most clones exhibit developmental failure before or soon after
birth, and even apparently normal clones often suffer from kidney or brain
malformations.5 ANDi, perversely, has failed to glow like a jellyfish.
Genetically modified pigs have a high incidence of gastric ulcers, arthritis,
cardiomegaly (enlarged heart), dermatitis, and renal disease. Despite the
biotechnology industry's assurances that genetically engineered soybeans have
been altered only by the presence of the alien gene, as a matter of fact the
plant's own genetic system has been unwittingly altered as well, with potentially
dangerous consequences.6 The list of malfunctions gets little notice;
biotechnology companies are not in the habit of publicizing studies that question
the efficacy of their miraculous products or suggest the presence of a serpent
in the biotech garden.
The mistakes might be dismissed as the necessary errors that characterize
scientific progress. But behind them lurks a more profound failure. The wonders
of genetic science are all founded on the discovery of the DNA double helix-by
Francis Crick and James Watson in 1953-and they proceed from the premise that
this molecular structure is the exclusive agent of inheritance in all living
things: in the kingdom of molecular genetics, the DNA gene is absolute monarch.
Known to molecular biologists as the "central dogma," the premise
assumes that an organism's genome-its total complement of DNA genes-should
fully account for its characteristic assemblage of inherited traits.7
The premise, unhappily, is false. Tested between 1990 and 2001 in one of the
largest and most highly publicized scientific undertakings of our time, the
Human Genome Project, the theory collapsed under the weight of fact. There
are far too few human genes to account for the complexity of our inherited
traits or for the vast inherited differences between plants, say, and people.
By any reasonable measure, the finding (published last February) signaled
the downfall of the central dogma; it also destroyed the scientific foundation
of genetic engineering and the validity of the biotechnology industry's widely
advertised claim that its methods of genetically modifying food crops are
"specific, precise, and predictable"8 and therefore safe.
In short, the most dramatic achievement to date of the $3 billion Human Genome
Project is the refutation of its own scientific rationale.
Since Crick first proposed it forty-four years ago, the central dogma has
come to dominate biomedical research. Simple, elegant, and easily summarized,
it seeks to reduce inheritance, a property that only living things possess,
to molecular dimensions: The molecular agent of inheritance is DNA, deoxyribonucleic
acid, a very long, linear molecule tightly coiled within each cell's nucleus.
DNA is made up of four different kinds of nucleotides, strung together in
each gene in a particular linear order or sequence. Segments of DNA comprise
the genes that, through a series of molecular processes, give rise to each
of our inherited traits:
Guided by Crick's theory, the Human Genome Project was intended to identify
and enumerate all of the genes in the human body by working out the sequence
of the three billion nucleotides in human DNA. In 1990, James Watson described
the Human Genome Project as "the ultimate description of life."
It will yield, he claimed, the information "that determines if you have
life as a fly, a carrot, or a man." Walter Gilbert, one of the project's
earliest proponents, famously observed that the 3 billion nucleotides found
in human DNA would easily fit on a compact disc, to which one could point
and say, "Here is a human being; it's me!"9 President Bill
Clinton described the human genome as "the language in which God created
life."10 How could the minute dissection of human DNA into a sequence
of 3 billion nucleotides support such hyperbolic claims? Crick's crisply stated
theory attempts to answer that question. It hypothesizes a clear-cut chain
of molecular processes that leads from a single DNA gene to the appearance
of a particular inherited trait. The explanatory power of the theory is based
on an extravagant proposition: that the DNA genes have unique, absolute, and
universal control over the totality of inheritance in all forms of life.
In order to control inheritance, Crick reasoned, genes would need to govern
the synthesis of protein, since proteins form the cell's internal structures
and, as enzymes, catalyze the chemical events that produce specific inherited
traits. The ability of DNA to govern the synthesis of protein is facilitated
by their similar structures-both are linear molecules composed of specific
sequences of subunits. A particular gene is distinguished from another by
the precise linear order (sequence) in which the four different nucleotides
appear in its DNA. In the same way, a particular protein is distinguished
from another by the specific sequence of the twenty different kinds of amino
acids of which it is made. The four kinds of nucleotides can be arranged in
numerous possible sequences, and the choice of any one of them in the makeup
of a particular gene represents its "genetic information" in the
same sense that, in poker, the order of a hand of cards informs the player
whether to bet high on a straight or drop out with a meaningless set of random
numbers.
Crick's "sequence hypothesis" neatly links the gene to the protein:
the sequence of the nucleotides in a gene "is a simple code for the amino
acid sequence of a particular protein." 11 This is shorthand for
a series of well-documented molecular processes that transcribe the gene's
DNA nucleotide sequence into a complementary sequence of ribonucleic acid
(RNA) nucleotides that, in turn, delivers the gene's code to the site of protein
formation, where it determines the sequential order in which the different
amino acids are linked to form the protein. It follows that in each living
thing there should be a one-to-one correspondence between the total number
of genes and the total number of proteins. The entire array of human genes-that
is, the genome must therefore represent the whole of a person's inheritance,
which distinguishes a person from a fly, or Walter Gilbert from anyone else.
Finally, because DNA is made of the same four nucleotides in every living
thing, the genetic code is universal, which means that a gene should be capable
of producing its particular protein wherever it happens to find itself, even
in a different species.
Crick's theory includes a second doctrine, which he originally called the
"central dogma" (though this term is now generally used to identify
his theory as a whole). The hypothesis is typical Crick: simple, precise,
and magisterial. "Once (sequential) information has passed into protein
it cannot get out again."12 This means that genetic information
originates in the DNA nucleotide sequence and terminates, unchanged, in the
protein amino acid sequence. The pronouncement is crucial' to the explanatory
power of the theory because it endows the gene with undiluted control over
the identity of the protein and the inherited trait that the protein creates.
To stress the importance of this genetic taboo, Crick bet the future of the
entire enterprise on it, asserting that "the discovery of just one type
of present-day cell" in which genetic information passed from protein
to nucleic acid or from protein to protein "would shake the whole intellectual
basis of molecular biology."13
Crick was aware of the brashness of his bet, for it was known that in living
cells proteins come into promiscuous molecular contact with numerous other
proteins and with molecules of DNA and RNA. His insistence that these interactions
are genetically chaste was designed to protect the DNA's genetic message-the
gene's nucleotide sequence-from molecular intruders that might change the
sequence or add new ones as it was transferred, step by step, from gene to
protein and thus destroy the theory's elegant simplicity.
Last February, Crick's gamble suffered a spectacular loss. In the journals
Nature and Science and at joint press conferences and television appearances,
the two genome research teams reported their results. The major result was
"unexpected."14 Instead of the 100,000 or more genes predicted
by the estimated number of human proteins, the gene count was only about 30,000.
By this measure, people are only about as gene-rich as a mustard-like weed
(which has 26,000 genes) and about twice as genetically endowed as a fruit
fly or a primitive worm-hardly an adequate basis for distinguishing among
"life as a fly, a carrot, or a man." In fact, an inattentive reader
of genomic CDs might easily mistake Walter Gilbert for a mouse, 99 percent
of whose genes have human counterparts. 15
The surprising results contradicted the scientific premise on which the genome
project was undertaken and dethroned its guiding theory, the central dogma.
After all, if the human gene count is too low to match the number of proteins
and the numerous inherited traits that they engender, and if it cannot explain
the vast inherited difference between a weed and a person, there must be much
more to the "ultimate description of life" than the genes, on their
own, can tell us.
Scientists and journalists somehow failed to notice what had happened. The
discovery that the human genome is not much different from the roundworm's
led Dr. Eric Lander, one of the leaders of the project, to declare that humanity
should learn "a lesson in humility." In the New York Times, Nicholas
Wade merely observed that the project's surprising results will have an "impact
on human pride" and that "human self-esteem may be in for further
blows" from future genome analyses, which had already found that the
genes of mice and men are very similar.16
The project's scientific reports offered little to explain the shortfall in
the gene count. One of the possible explanations for why the gene count is
"so discordant with our predictions" was described, in full, last
February in Science as follows: "nearly 4096 of human genes are alternatively
spliced."18 Properly understood, this modest, if esoteric, account
fulfills Crick's dire prophecy: it "shakes the whole intellectual basis
of molecular biology" and undermines the-scientific validity of its application
to genetic engineering.
Alternative splicing is a startling departure from the orderly design of the
central dogma, in which the distinctive nucleotide sequence of a single gene
encodes the amino acid sequence of a single protein. According to Crick's
sequence hypothesis, the gene's nucleotide sequence (i.e., its "genetic
information") is transmitted, altered in form but not in content, through
RNA intermediaries, to the distinctive amino acid sequence of a particular
protein. In alternative splicing, however, the gene's original nucleotide
sequence is split into fragments that are then recombined in different ways
to encode a multiplicity of proteins, each of them different in their amino
acid sequence from each other and from the sequence that the original gene,
if left intact, would encode.
The molecular events that accomplish this genetic reshuffling are focused
on a particular stage in the overall DNA-RNA-protein progression. It occurs
when the DNA gene's nucleotide sequence is transferred to the next genetic
carrier -messenger RNA. A specialized group of fifty to sixty proteins, together
with five small molecules of RNA-known as a "spliceosome"-assembles
at sites along the length of the messenger RNA, where it cuts apart various
segments of the messenger RNA. Certain of these fragments are spliced together
into a number of alternative combinations, which then have nucleotide sequences
that differ from the gene's original one. These numerous, redesigned messenger
RNAs govern the production of an equal number of proteins that differ in their
amino acid sequence and hence in the inherited traits that they engender.
For example, when the word TIME is rearranged to read MITE, EMIT, and ITEM,
three alternative units of information are created from an original one. Although
the original word (the unspliced messenger RNA nucleotide sequence) is essential
to the process, so is the agent that performs the rearrangement (the spliceosome).19
Alternative splicing can have an extraordinary impact on the gene/protein
ratio. We now know that a single gene originally believed to encode a single
protein that occurs in cells of the inner ear of chicks (and of humans) gives
rise to 576 variant proteins, differing in their amino acid sequences.20
The current record for the number of different proteins produced from a single
gene by alternative splicing is held by the fruit fly, in which one gene generates
up to 38,016 variant protein molecules.21
Alternative splicing thus has a devastating impact on Crick's theory: it breaks
open the hypothesized isolation of the molecular system that transfers genetic
information from a single gene to a single protein. By rearranging the single
gene's nucleotide sequence into a multiplicity of new messenger RNA sequences,
each of them different from the unspliced original, alternative splicing can
be said to generate new genetic information. Certain of the spliceosome's
proteins and RNA components have an affinity for particular sites and, binding
to them, form an active catalyst that cuts the messenger RNA and then rejoins
the resulting fragments. The spliceosome proteins thus contribute to the added
genetic information that alternative splicing creates. But this conclusion
conflicts with Crick's second hypothesis-that proteins cannot transmit genetic
information to nucleic acid (in this case, messenger RNA)- and shatters the
elegant logic of Crick's interlocking duo of genetic hypotheses.22
The discovery of alternative splicing also bluntly contradicts the precept
that motivated the genome project. It nullifies the exclusiveness of the gene's
hold on the molecular process of inheritance and disproves the notion that
by counting genes one can specify the array of proteins that define the scope
of human inheritance. The gene's effect on inheritance thus cannot be predicted
simply from its nucleotide sequence-the determination of which is one of the
main purposes of the Human Genome Project. Perhaps this is why the crucial
role of alternative splicing seems to have been ignored in the planning of
the project and has been obscured by the cunning manner in which its chief
result has been reported. Although the genome reports do not mention it, alternative
splicing was discovered well before the genome project was even planned-in
1978 in virus replication23, and in 1981 in human cells.24 By
1989, when the Human Genome Project was still being debated among molecular
biologists, its champions were surely aware that more than 200 scientific
papers on alternative splicing of human genes had already been published.25
Thus, the shortfall in the human gene count could-indeed should-have been
predicted. It is difficult to avoid the conclusion-troublesome as it is-that
the project's planners knew in advance that the mismatch between the numbers
of genes and proteins in the human genome was to be expected, and that the
$3 billion project could not be justified by the extravagant claims that the
genome-or perhaps God speaking through it-would tell us who we are.26
Alternative splicing is not the only discovery over the last forty years that
has contradicted basic precepts of the central dogma. Other research has tended
to erode the centrality of the DNA double helix itself, the theory's ubiquitous
icon. In their original description of the discovery of DNA, Watson and Crick
commented that the helix's structure "immediately suggests a possible
copying mechanism for the genetic material." Such self-duplication is
the crucial feature of life, and in ascribing it to DNA, Watson and Crick
concluded, a bit prematurely, that they had discovered life's magic molecular
key.27
Biological replication does include the precise duplication of DNA, but this
is accomplished by the living cell, not by the DNA molecule alone. In the
development of a person from a single fertilized egg, the egg cell and the
multitude of succeeding cells divide in two. Each such division is preceded
by a doubling of the cell's DNA; two new DNA strands are produced by attaching
the necessary nucleotides (freely available in the cell), in the proper order,
to each of the two DNA strands entwined in the double helix. As the single
fertilized egg cell grows into an adult, the genome is replicated many billions
of times, its precise sequence of three billion nucleotides retained with
extraordinary fidelity.28 The rate of error-that is, the insertion
into the newly made DNA sequence of a nucleotide out of its proper order-is
about one in 10 billion nucleotides. But on its own, DNA is incapable of such
faithful replication; in a test-tube experiment, a DNA strand, provided with
a mixture of its four constituent nucleotides, will line them up with about
one in a hundred of them out of its proper place. On the other hand, when
the appropriate protein enzymes are added to the test rube, the fidelity with
which nucleotides are incorporated in the newly made DNA strand is greatly
improved, reducing the error rate to one in 10 million. These remaining errors
are finally reduced to one in 10 billion by a set of "repair" enzymes
(also proteins) that detect and remove mismatched nucleotides from the newly
synthesized DNA.29
Thus, in the living cell the gene's nucleotide code can be replicated faithfully
only because an array of specialized proteins intervenes to prevent most of
the errors-which DNA by itself is prone to make-and to repair the few remaining
ones. Moreover, it has been known since the 1960s that the enzymes that synthesize
DNA influence its nucleotide sequence. In this sense, genetic information:
arises not from DNA alone but through its essential collaboration with protein
enzymes-a contradiction of the central dogma's precept that inheritance is
uniquely governed by the self-replication of the DNA double helix.
Another important divergent observation is the following: in order to become
biochemically active and actually generate the inherited trait, the newly
made protein, a strung-out ribbon of a molecule, must be folded up into a
precisely organized ball-like structure. The biochemical events that give
rise to genetic traits - for example, enzyme action that synthesizes a particular
eye-color pigment-take place at specific locations on the outer surface of
the three-dimensional protein, which is created by the particular way in which
the molecule is folded into that structure. To preserve the simplicity of
the central dogma, Crick was required to assume, without any supporting evidence,
that the nascent protein - a linear molecule - always folded itself up in
the right way once its amino acid sequence had been determined. In the 1980s,
however, it was discovered that some nascent proteins are on their own likely
to become misfolded- and therefore remain biochemically inactive -unless they
come in contact with a special type of "chaperone" protein that
property folds them.
The importance of these chaperones has been underlined in recent years by
research on degenerative brain diseases that are caused by "prions,"
research that has produced some of the most disturbing evidence that the central
dogma is dangerously misconceived.30 Crick's theory holds that biological
replication, which is essential to an organism's ability to infect another
organism, cannot occur without nucleic acid. Yet when scrapie, the earliest
known such disease, was analyzed biochemically, no nucleic acid-neither DNA
nor RNA-could be found in the infectious material that transmitted the disease.
In the 1980s, Stanley Prusiner confirmed that the infectious agents that cause
scrapie, mad cow disease, and similar very rare but invariably fatal human
diseases are indeed nucleic-acid-free proteins (he named them prions), which
replicate in an entirely unprecedented way. Invading the brain, the prion
encounters a normal brain protein, which it then refolds to match the prion's
distinctive three-dimensional shape. The newly refolded protein itself becomes
infectious and, acting on another molecule of the normal protein, sets up
a chain reaction that propagates the disease to its fatal end. 31
The prion's unusual behavior raises important questions about the connection
between a protein's amino acid sequence and its biochemically active, folded-up
structure. Crick assumed that the protein's active structure is automatically
determined by its amino acid sequence (which is, after all, the sign of its
genetic specificity), so that two proteins with the same sequence ought to
be identical in their activity. The prion violates this rule. In a scrapie-infected
sheep, the prion and the brain protein that it refolds have the same amino
acid sequence, but one is a normal cellular component and the other is a fatal
infectious agent. This suggests 'that the protein's folded-up configuration
is, to some degree, independent of its amino acid sequence and therefore determined,
in part, by something other than the DNA gene that governed the synthesis
of that sequence. And since the prion protein's three-dimensional shape is
endowed with transmissible genetic information, it violates another fundamental
Crick precept as well -the forbidden passage of genetic information from one
protein to another.* Thus, what is known about the prion is a somber warning
that processes far removed from the conceptual constraints of the central
dogma are at work in molecular genetics and can lead to fatal disease.**
--------------------------------------------------------------------------------------------------------------------------
*Although Crick localizes the protein's genetic information in its amino acid
sequence, it must also be found in the protein's three-dimensional folded
structure, on the surface of which the highly specific biochemical activity
that generates the inherited trait takes place.
**In 1997, when Prusiner was awarded the Nobel Prize, several scientists publicly
denounced the decision because that the prion, through infectious, is a nucleic-acid-free
protein contradicted the central dogma and was too controversial to warrant
the award. This bias impeded not only scientific progress but human health
as well. Although Prusiner's results explained why the prion's structure resists
them, conventional sterilization procedures were nevertheless relied on to
fight mad cow disease in Britain, with fatal results.
--------------------------------------------------------------------------------------------------------------------------
By the mid 1980s, therefore, long before the $3 billion Human Genome Project
was funded, and long before genetically modified crops began to appear in
our fields, a series of protein-based processes had already intruded on the
DNA gene's exclusive genetic franchise. An array of protein enzymes must repair
the all-too-frequent mistakes in gene replication and in the transmission
of the genetic code to proteins as well. Certain proteins, assembled in spliceosomes,
can reshuffle the RNA transcripts, creating hundreds and even thousands of
different proteins from a single gene. A family of chaperones, proteins that
facilitate the proper folding - and therefore the biochemical activity-of
newly made proteins, form an essential part of the gene-to-protein process.
By any reasonable measure, these results contradict the central dogma's cardinal
maxim: that a DNA gene exclusively governs the molecular processes that give
rise to a particular inherited trait. The DNA gene clearly exerts an important
influence on inheritance, but it is not unique in that respect and acts only
in collaboration with a multitude of protein-based processes that prevent
and repair incorrect sequences, transform the nascent protein into its folded,
active form, and provide crucial added genetic information well beyond that
originating in the gene itself. The net outcome is that no single DNA gene
is the sole source of a given protein's genetic information and therefore
of the inherited trait.
The credibility of the Human Genome Project is not the only casualty of the
scientific community's stubborn resistance to experimental results that contradict
the central dogma. Nor is it the most significant casualty. The fact that
one gene can give rise to multiple proteins also destroys the theoretical
foundation of a multibillion-dollar industry, the genetic engineering of food
crops. In genetic engineering it is assumed, without adequate experimental
proof, that a bacterial gene for an insecticidal protein, for example, transferred
to a corn plant, will produce precisely that protein and nothing else. Yet
in that alien genetic environment, alternative splicing of the bacterial gene
might give rise to multiple variants of the intended protein- or even to proteins
bearing little structural relationship to the original one, with unpredictable
effects on ecosystems and human health.
The delay in dethroning the all-powerful gene led in the 1990s to a massive
invasion of genetic engineering into American agriculture, though its scientific
justification had already been compromised a decade or more earlier. Nevertheless,
ignoring the profound fact that in nature the normal exchange of genetic material
occurs exclusively within a single species, biotech-industry executives have
repeatedly boasted that, in comparison, moving a gene from one species to
another is not only normal but also more specific, precise, and predictable.
In only the last five years such transgenic crops have taken over 68 percent
of the U.S. soybean acreage, 26 percent of the corn acreage, and more than
69 percent of the cotton acreage.32
That the industry is guided by the central dogma was made explicit by Ralph
W.F. Hardy, president of the National Agricultural Biotechnology Council and
formerly director of life sciences at DuPont, a major producer of genetically
engineered seeds. In 1999, in Senate testimony, he succinctly described the
industry's guiding theory this way: "DNA (top management molecules) directs
RNA formation (middle management molecules) directs protein formation (worker
molecules)."33 The outcome of transferring a bacterial gene into
a corn plant is expected to be as predictable as the result of a corporate
takeover: what the workers do will be determined precisely by what the new
top management tells them to do. This Reaganesque version of the central dogma
is the scientific foundation upon which each year billions of transgenic plants
of soybeans, corn, and cotton are grown with the expectation that the particular
alien gene in each of them will be faithfully replicated in each of the billions
of cell divisions that occur as each plant develops; that in each of the resultant
cells the alien gene will encode only a protein with precisely the amino acid
sequence that it encodes in its original organism; and that throughout this
biological saga, despite the alien presence, the plant's natural complement
of DNA will itself be properly replicated with no abnormal changes in composition.
In an ordinary unmodified plant the reliability of this natural genetic process
results from the compatibility between its gene system and its equally necessary
protein-mediated systems. The harmonious relation between the two systems
develops during their cohabitation, in the same species, over very long evolutionary
periods, in which natural selection eliminates incompatible variants. In other
words, within a single species the reliability of the successful outcome of
the complex molecular process that gives rise to the inheritance of particular
traits is guaranteed by many thousands of years of testing, in nature.
In a genetically engineered transgenic plant, however, the alien transplanted
bacterial gene must properly interact with the plant's protein-mediated systems.
Higher plants, such as corn, soybeans, and cotton, are known to possess proteins
that repair DNA miscoding;34 proteins that alternatively splice messenger
RNA and thereby produce a multiplicity of different proteins from a single
gene;35 and proteins that chaperone the proper folding of other, nascent
proteins.36 But the plant systems' evolutionary history is very different
from the bacterial gene's. As a result, in the transgenic plant the harmonious
interdependence of the alien gene and the new host's protein-mediated systems
is likely to be disrupted in unspecified, imprecise, and inherently unpredictable
ways. In practice, these disruptions are revealed by the numerous experimental
failures that occur before a transgenic organism is actually produced and
by unexpected genetic changes that occur even when the gene has been successfully
transferred.37
Most alarming is the recent evidence that in a widely grown genetically modified
food crop - soybeans containing an alien gene for herbicide resistance-the
transgenic host plant's genome has itself been unwittingly altered. The Monsanto
Company admitted in 2000 that its soybeans contained some extra fragments
of the transferred gene, but nevertheless concluded that "no new proteins
were expected or observed to be produced."38 A year later, Belgian
researchers discovered that a segment of the plant's own DNA had been scrambled.
The abnormal DNA was large enough to produce a new protein, a potentially
harmful protein.39
One way that such mystery DNA might arise is suggested by a recent study showing
that in some plants carrying a bacterial gene, the plant's enzymes that correct
DNA replication errors rearrange the alien gene's nucleotide sequence.40
The consequences of such changes cannot be foreseen. The likelihood in genetically
engineered crops of even exceedingly rare, disruptive effects of gene transfer
is greatly amplified by the billions of individual transgenic plants already
being grown annually in the United States.
The degree to which such disruptions do occur in genetically modified crops
is not known at present, because the biotechnology industry is not required
to provide even the most basic information about the actual composition of
the transgenic plants to the regulatory agencies. No tests, for example, are
required to show that the plant actually produces a protein with the same
amino acid sequence as the original bacterial protein. Yet this information
is the only way to confirm that the transferred gene does in fact yield the
theory-predicted product. Moreover, there are no required studies based on
detailed analysis of the molecular structure and biochemical activity of the
alien gene and its protein product in the transgenic commercial crop. Given
that some unexpected effects may develop very slowly, crop plants should be
monitored in successive generations as well. None of these essential tests
are being performed, and billions of transgenic plants are now being grown
with only the most rudimentary knowledge about the resulting changes in their
composition. Without detailed, ongoing analyses of the transgenic crops, there
is no way of knowing if hazardous consequences might arise. Given the failure
of the central dogma, there is no assurance that they will not. The genetically
engineered crops now being grown represent a massive uncontrolled experiment
whose outcome is inherently unpredictable. The results could be catastrophic.
Crick's central dogma has played a powerful role in creating both the Human
Genome Project and the unregulated spread of genetically engineered food crops.
Yet as evidence that contradicts this governing theory has accumulated, it
has had no effect on the decisions that brought both of these monumental undertakings
into being. It is true that most of the experimental results generated by
the theory confirmed the concept that genetic information, in the form of
DNA nucleotide sequences, is transmitted from DNA via RNA to protein. But
other observations have contradicted the one-to-one correspondence of gene
to protein and have broken the DNA gene's exclusive franchise on the molecular
explanation of heredity. In the ordinary course of science, such new facts
would be woven into the theory, adding to its complexity, redefining its meaning,
or, as necessary, challenging its basic premise. Scientific theories are meant
to be falsifiable; this is precisely what makes them scientific theories.
The central dogma has been immune to this process. Divergent evidence is duly
reported and, often enough, generates intense research, but its clash with
the governing theory is almost never noted.
Because of their commitment to an obsolete theory, most molecular biologists
operate under the assumption that DNA is the secret of life, whereas the careful
observation of the hierarchy of living processes strongly suggests that it
is the other way around: DNA did not create life; life created DNA.41
When life was first formed on the earth, proteins must have appeared before
DNA because, unlike DNA, proteins have the catalytic ability to generate the
chemical energy needed to assemble small ambient molecules into larger ones
such as DNA. DNA is a mechanism created by the cell to store information information
produced by the cell. Early life survived because it grew, building up its
characteristic array of complex molecules. It must have been a sloppy kind
of growth; what was newly made did not exactly replicate what was already
there. But once produced by the primitive cell, DNA could become a stable
place to store structural information about the cell's chaotic chemistry,
something like the minutes taken by a secretary at a noisy committee meeting.
There can be no doubt that the emergence of DNA was a crucial stage in the
development of life, but we must avoid the mistake of reducing life to a master
molecule in order to satisfy our emotional need for unambiguous simplicity.
The experimental data, shorn of dogmatic theories, points to the irreducibility
of the living cell, the inherent complexity of which suggests that any artificially
altered genetic system, given the magnitude of our ignorance, must sooner
or later give rise to unintended, potentially disastrous, consequences. We
must be willing to recognize how little we truly understand about the secrets
of the cell, the fundamental unit of life.
Why, then, has the central dogma continued to stand? To some degree die theory
has been protected from criticism by a device more common to religion than
science: dissent, or merely the discovery of a discordant fact, is a punishable
offense, a heresy that might easily lead to professional ostracism. Much of
this bias can be attributed to institutional inertia, a failure of rigor,
but there are other, more insidious, reasons why molecular geneticists might
be satisfied with the status quo; the central dogma has given them such a
satisfying, seductively simplistic explanation of heredity that it seemed
sacrilegious to entertain doubts. The central dogma was simply too good not
to be true.
As a result, funding for molecular genetics has rapidly increased over the
last twenty years; new academic institutions, many of them "genomic"
variants of more mundane professions, such as public health, have proliferated.
At Harvard and other universities, the biology curriculum has become centered
on the genome. But beyond the traditional scientific economy of prestige and
the generous funding that follows it as night follows day, money has distorted
the scientific process as a once purely academic pursuit has been commercialized
to an astonishing degree by the researchers themselves. Biology has become
a glittering target for venture capital; each new discovery brings new patents,
new partnerships, new corporate affiliations. But as the growing opposition
to transgenic crops clearly shows, there is persistent public concern not
only with the safety of genetically engineered foods but also with the inherent
dangers in arbitrarily overriding patterns of inheritance that are embedded
in the natural world through long evolutionary experience. Too often those
concerns have been derided by industry scientists as the "irrational"
fears of an uneducated public. The irony, of course, is that the biotechnology
industry is based on science that is forty years old and conveniently devoid
of more recent results, which show that there are strong reasons to fear the
potential consequences of transferring a DNA gene between species.
What the public fears is not the experimental science but the fundamentally
irrational decision to let it out of the laboratory into the real world before
we truly understand it.
References
1: Dolly. Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH. Viable offspring
derived from fetal and adult mammalian cells. Nature. 1997. 385(6619):810-3.
2: ANDi. Chan AWS, Chong KY, Martinovich C, Simerly C, and Schatten G. Transgenic
Monkeys Produced by Retroviral Gene Transfer into Mature Oocytes. Science. 2001.
291:309-312.
3: Pigs that carry a gene for bovine growth hormone. Pursel VG, Pinkert CA,
Miller KF, Bolt DJ, Campbell RG, Palmiter RD, Brinster RL, Hammer RE. Genetic
engineering of livestock. Science. 1989. 244(4910):1281-8.
4: Genetically engineered corn and soybean plants. Thayer AM. Agbiotech. Chem.
Engin. News. Oct 2, 2000. page.....
5: Developmental failure and malformations in clones. Jaenisch R and Wilmut
I. Don't Clone Hunans. Science. 2001. 291:2552
6: Altered host genome in transgenic soybeans. Windels P., Taverniers I., Depicker
A., Van Bockstaele E., and De Loose M.. Characterisation of the Roundup Ready
soybean insert. Eur Food Res Technol. 2001. 213:107-112
7: The central dogma. Crick F.H.C. On Protein Synthesis. In: Symposium of the
society for experimental biology XII, p153. New York: Academic Press, 1958.
This carefully reasoned account describes the molecular processes, as then known,
that enable the DNA gene to govern the synthesis of a specific
protein. Crick's basic hypotheses, the Sequence Hypothesis and the Central Dogma,
are summarized.
8: Watson quotation. Gorner P., and Kotulak R. Life by Design. Chicago Tribune.
Apr 8, 1990.
9: Gilbert quotation. Gilbert W. A Vision of the Grail. In: Daniel J Kevles
and Leroy Hoof, eds. The Code of Codes: Scientific and Social Issues in the
Human Genome Project, p96, Cambridge Harvard University Press. 1992.
10: Clinton quotation. Press Conference, White House, Office of Press Secretary,
June 26, 2000.
11: Crick quotation. Crick 1958 (above), page 152.
12: Crick quotation. Crick 1958 (above), page 153.
13: Crick quotation. Crick F.H.C. The Central Dogma of Molecular Biology. 1970,
Nature 227:561-563 (see page 563).
14: Nature article on Human Genome Project (public funding). International Human
Genome Sequencing Consortium. Initial sequencing and analysis of the human genome.
Nature. 2001. 409(6822): 860-921
15: Science article on Human Genome Project (private funding). Venter JC, Adams
MD, Myers EW, et al. The Sequence of the Human Genome. Science. 2001. 291:1304-1351.
16: Wade quotation. Wade N. Genetic Sequence of Mouse is also Decoded. New York
Times. Feb 13, 2001.
17: Lander quotation.
Dentzer S. "Sequencing Life", PBS Online News Hour. Feb 12 2001.
18: Alternative splicing quotation. Venter et al 2001 (above), page 1345.
19: The role of the spliceosome in alternative splicing. Collins CA, and Guthrie
C. Allelespecific genetic interactions between Prp8 and RNA active site residues
suggest a function for Prp8 at the catalytic core of the spliceosome. Genes
Dev. 1999. 13(15):1970-82.
20: Alternative splicing; 576 inner ear variant proteins. Black DL. Splicing
in the inner ear: a familiar tune, but what are the instruments? Neuron. 1998.
20(2):165-8.
21: Alternative splicing; 38,016 variant fruit fly proteins. Schmucker D, Clemens
JC, Shu H, Worby CA, Xiao J, Muda M, Dixon JE, Zipursky SL. Drosophila Dscam
is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell.
2000 Jun 9;101(6):671-84.
22: The role of spliceosome proteins in the genetic information created by alternative
splicing. See Collins et al 1999 (above).
23: Alternative splicing in virus replication, 1078. Nevins R, and Darnell JE
Jr. Steps in the processing of Ad2 mRNA: Poly(A)+ nuclear sequences are conserved
and Poly(A) addition precedes splicing. Cell. 1978. 15:14771493.
24: Alternative splicing in human cells, 1981. DeNoto FM, Moore DD, and Goodman
HM. Human growth hormone DNA sequence and mRNA structure: possible alternative
splicing. Nuc Acids Res. 1981. 9:3719-30.
25: Papers on alternative splicing in humans published by 1989. Results of PubMed
search for articles containing "alternative splicing" AND "human".
26: the $3 billion project Venter et al 2001 (above). page 1305
27: Watson and Crick quotation. Watson J.D. and Crick F.H.C. Molecular structure
of nucleic acids: A structure for deoxyribose nucleic acid. Nature. 1953. 171:737-738.
28: Processes that improve fidelity of DNA replication. Radman M., and Wagner
R. The High Fidelity of DNA Replication. Scientific American.1988. August:40-46
29: Enzymes that synthesize DNA influence its nucleotide sequence. Commoner
B. The roles of deoxyribonucleic acid in inheritance. Nature. 1964. 203:486-91
Commoner B. Failure of the WatsonCrick theory as a chemical explanation of inheritance.
Nature. 1968. 220:334-340.
30: Chaperones. Ellis RJ. Proteins as molecular chaperones. Nature. 1987. 328:378-379.
Ellis RJ and Hemmingsen SM. Molecular chaperones: proteins essential for the
biogenesis of some macromolecular structures. 1989. Trends Bioch Sci. 14(8):339-42
31: Prions. S.B. Prusiner. The Prion Diseases One Protein, Two Shapes. Scientific
American. 1995. 272(1):48-57.
32: U.S. transgenic
crops. Report released by the National Agricultural Statistics Service, the
Agricultural Statistics Board, and the U.S. Department of Agriculture. Acreage.
June 29, 2001.
33: Hardy quotation.
Hardy RWF. In Agricultural Research and Development, Hearing, U.S Senate before
Senate Committee on Agriculture, Nutrition and Forestry. Oct 6, 1999.
34: DNA miscoding
repair in plants. Tuteja N, Singh MB, Misra MK, Bhalla PL, Tuteja R. Molecular
mechanisms of damage and repair: progress in plants. Crit Rev Biochem Mol Biol.
2001;36(4):337-97.
35:
Alternatively splicing in plants. Comelli P, Konig J, Werr W. Alternative splicing
of two leading exons partitions promoter activity between the coding regions
of the maize homeobox gene Zmhox1a and Trap
(transposon-associated protein). Plant Mol Biol. 1999 Nov;41(5):615-25.
36: Chaperones in plants. Lund AA, Blum PH, Bhattramakki D, Elthon TE. Heat-stress
response of mitochondria. Plant Physiol. 1998 Mar;116(3):1097-110.
37: Experimental failures in transgenic organisms. Pursel VG, Hammer RE, Bolt
DJ, Palmiter RD, Brinster RL. Integration, expression and germ-line transmission
of growth-related genes in pigs. Reprod Fertil Suppl . 1990;41:7787 Pursel VG,
Rexroad CE Jr, Bolt DJ, Miller KF, Wall RJ, Hammer
RE, Pinkert CA, Palmiter RD, Brinster RL. Progress on gene transfer in farm
animals. Vet Immunol Immunopathol 1987 Dec;17(1-4):303-12
38: Monsanto quotation. Monsanto Company Product Safety Center. Confidential
Report (MSL-16712). Updated Molecular Characterization and Safety Assessment
of Roundup Ready Soybean Event 403-2. Monsanto Company. St Louis, MO.
39: Abnormal host DNA in transgenic soybeans. Windels et al 2001 (above).
40: Transgenic plant's enzymes rearrange the alien gene's nucleotide sequence.
Kohli A, Leech M, Vain P, Laurie DA, Christou P. Transgene organization in rice
engineered through direct DNA transfer supports a two-phase integration mechanism
mediated by the establishment of integration hot spots. Proc Natl Acad Sci U
S A. 1998 Jun 9;95(12):7203-8.
41: DNA did not create life; life created DNA. Commoner B. Relationship between
biological information and the origin of life. In: Matsuno K, Dose K, Harada
K, Rohlfing DL, eds. Molecular Evolution and Protobiology, p283, Plenum Press.
New York. 1984.
Commoner B. Biochemical, biological and atmospheric evolution. Proc Natl Acad
Sci USA. 1965 Jun;53(6):1183-1194.
Back to Articles/Biotechnology
Home |
New to Raw?
|
Hotline |
Action Forum |
|
Multi/Media |
Events |
Press/Media
|